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Run · Voynich Manuscript

T41 diagnostic: the true key's basin has higher likelihood than any random EM restart (a search problem)

Gold text is used here only to build the true channel for the diagnostic; no key on the manuscript is chosen this way.

The model is right and the search is wrong: a key close to the truth is a better optimum of the lattice likelihood than anything random restarts find, by 500-800 nats. This justifies spending the fresh-idea slot on annealing and population annealing, not on a new model.one sign per letter, no nulls: EM from truth -40,505 (key 0.777), best random restart -41,315 (key 0.186). Full T39 setting: EM from truth -53,462 (key 0.851), best random restart -53,957 (key 0.250)0

Result

RunMeasuredResultAgainstDecisionDate
RunTraining log-likelihood and key accuracy: EM started from the true key vs 10 random restarts, on the planted controlone sign per letter, no nulls: EM from truth -40,505 (key 0.777), best random restart -41,315 (key 0.186). Full T39 setting: EM from truth -53,462 (key 0.851), best random restart -53,957 (key 0.250)The true channel itself, before EM: -41,654 and -55,406 (key 0.777, 0.850 · the rest are nomenclator words of the control's plaintext that the Latin element model doesn't have)The model is right and the search is wrong: a key close to the truth is a better optimum of the lattice likelihood than anything random restarts find, by 500-800 nats. This justifies spending the fresh-idea slot on annealing and population annealing, not on a new model.

What it used and found

Parameters

pw = 0.25, alpha = 0.05, control = Pliny NH 16, period.generate seed 77, em_iterations = 60, restart_seeds = 1000-1009, random_restarts = 10

Cite it

Mysteries Department. (2026). T41 diagnostic: the true key's basin has higher likelihood than any random EM restart (a search problem) [Run RUN0DCG2Q30P808]. https://mysteriesdept.com/r/RUN0DCG2Q30P808
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